Top 5 Shopify Shipping Apps to Replace ShipStation in 2026

Why Shopify Merchants Are Leaving ShipStation

ShipStation was the go-to shipping solution for years. But in 2026, merchants are switching because:

• Monthly fees increased to $25-160/month
• UPS/FedEx rates aren't competitive anymore
• Complex interface requires training
• Rate shopping is limited on lower tiers

Let's look at the best alternatives that Shopify sellers are switching to.

Quick Comparison Table

#1: Atoship (Recommended)

Why it's #1: Best rates, truly free, built for Shopify.

Pros:

• ✅ $0 monthly fee forever
• ✅ Up to 89% off USPS, 55% off UPS
• ✅ One-click Shopify integration
• ✅ Automatic order sync
• ✅ Batch label printing
• ✅ Branded tracking pages
• ✅ Multi-carrier rate shopping

Cons:

• ❌ Newer platform (founded 2024)

Real Savings Example: Shipping 200 packages/month:

• ShipStation cost: $99/mo + higher rates = ~$1,450 total
• Atoship cost: $0/mo + discounted rates = ~$980 total
• Monthly savings: $470

#2: Pirate Ship

Best for: USPS-focused shippers who don't need UPS/FedEx.

Pros:

• ✅ Free to use
• ✅ Excellent USPS rates
• ✅ Simple interface

Cons:

• ❌ Limited UPS options
• ❌ No FedEx
• ❌ Basic Shopify integration
• ❌ No automation rules

#3: Shippo

Best for: Very small sellers (<50 orders/month).

Pros:

• ✅ Free tier available
• ✅ Good carrier selection
• ✅ International shipping support

Cons:

• ❌ Free tier has limits
• ❌ Rates not as competitive
• ❌ Interface can be clunky

#4: Ordoro

Best for: Sellers who need inventory management + shipping.

Pros:

• ✅ Inventory management built-in
• ✅ Multi-channel support
• ✅ Dropshipping features

Cons:

• ❌ $59/month minimum
• ❌ Expensive for shipping-only needs
• ❌ Learning curve

#5: EasyShip

Best for: International-focused sellers.

Pros:

• ✅ 250+ shipping solutions
• ✅ Duties/taxes calculator
• ✅ Good for cross-border

Cons:

• ❌ $29/month for useful features
• ❌ Domestic rates not best
• ❌ Complex pricing

Feature Comparison: What Matters for Shopify

Migration Guide: ShipStation to Atoship

Step 1: Set Up Atoship (5 minutes)

Create free account at atoship.com

Click "Connect Shopify Store"

Authorize the app in Shopify

Step 2: Configure Settings

• Import your saved package presets
• Set up automation rules
• Configure label printer

Step 3: Run in Parallel (Optional)

• Keep ShipStation for 1 week
• Compare rates side-by-side
• Verify everything works

Step 4: Cancel ShipStation

• Export any reports you need
• Cancel subscription
• Remove Shopify app

The Verdict

For most Shopify sellers in 2026, Atoship offers the best combination of:

• Lowest shipping rates
• Zero monthly fees
• Modern, easy interface
• Excellent Shopify integration

Stop paying monthly fees for shipping software. Try Atoship free and see how much you can save.